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    LOC4339856 L-lactate dehydrogenase B [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339856, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4339856
    Gene description
    L-lactate dehydrogenase B
    Locus tag
    OSNPB_060104900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4339856 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (502995..504499, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (347006..348527, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene BAG family molecular chaperone regulator 7 Neighboring gene lipid transfer protein EARLI 1 Neighboring gene vacuolar-processing enzyme Neighboring gene scarecrow-like protein 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables L-lactate dehydrogenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lactate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in pyruvate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    L-lactate dehydrogenase B
    Names
    Os06g0104900
    P0644B06.17
    putative L-lactate dehydrogenase A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      502995..504499 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015787092.3 → XP_015642578.1  L-lactate dehydrogenase B

      UniProtKB/TrEMBL
      A0A0P0WRP1, A2Y8B2, A3B7K2, Q9LWZ6
      Conserved Domains (1) summary
      PLN02602
      Location:1 → 360
      PLN02602; lactate dehydrogenase
    Nucleotide Protein
    Heading Accession and Version

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