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    LOC4346326 photosystem I reaction center subunit II, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346326, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4346326
    Gene description
    photosystem I reaction center subunit II, chloroplastic
    Locus tag
    OSNPB_080560900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4346326 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (28231107..28232181, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (28083384..28084250, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene polcalcin Phl p 7 Neighboring gene uncharacterized LOC107277448 Neighboring gene glutathione S-transferase T2-like Neighboring gene protein WALLS ARE THIN 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A network of rice genes associated with stress response and seed development. Cooper B, et al. Proc Natl Acad Sci U S A, 2003 Apr 15. PMID 12684538, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in photosynthesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of photosystem I IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of photosystem I reaction center IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    photosystem I reaction center subunit II, chloroplastic
    Names
    Os08g0560900
    P0604E01.24
    chloroplast photosystem I reaction center subunit II precursor-like protein
    putative photosystem I reaction center subunit II, chloroplast precursor (Photosystem I 20 kDa subunit) (PSI-D)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      28231107..28232181 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794571.3 → XP_015650057.1  photosystem I reaction center subunit II, chloroplastic

      UniProtKB/TrEMBL
      A2YY54, A3BVS4, Q0J3P0, Q84PB4
      Conserved Domains (1) summary
      PLN00041
      Location:13 → 203
      PLN00041; photosystem I reaction center subunit II; Provisional
    Nucleotide Protein
    Heading Accession and Version

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