LOC4334802 26S proteasome non-ATPase regulatory subunit 12 homolog A [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4334802
Gene description: 26S proteasome non-ATPase regulatory subunit 12 homolog A
Locus tag: OSNPB_030851300
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: OsRPN5
Expression: Ubiquitous expression in roots after flowering (RPKM 93.2), leaves after flowering (RPKM 90.4) and 6 other tissues See more
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Genomic context

Location:: chromosome: 3

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	3	NC_089037.1 (36812638..36816659, complement)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	3	NC_029258.1 (35834084..35838016, complement)

Chromosome 3 - NC_089037.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Gene Ontology Provided by RefSeq

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info	PubMed
part_of proteasome regulatory particle, lid subcomplex	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: 26S proteasome non-ATPase regulatory subunit 12 homolog A

Names: 26S proteasome regulatory particle non-ATPase subunit5; Os03g0851300

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001419004.1 → NP_001405933.1 26S proteasome non-ATPase regulatory subunit 12 homolog A

Status: VALIDATED

Source sequence(s)

AK071162

UniProtKB/TrEMBL

A0A0P0W5I1, B8ANQ0, Q851Y6

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

NC_089037.1 Reference ASM3414082v1 Primary Assembly

Range

36812638..36816659 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015774955.1 → XP_015630441.1 26S proteasome non-ATPase regulatory subunit 12 homolog A isoform X1

UniProtKB/TrEMBL

B8ANQ0

Conserved Domains (1) summary

COG5071
Location:5 → 438

RPN5; 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]