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    LOC4331174 ethylene receptor 3-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331174, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4331174
    Gene description
    ethylene receptor 3-like
    Locus tag
    OSNPB_020820900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    ETR3; OsPK2; OsETR3; OJ1119_A01.4-1; OJ1119_A01.4-2
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    Genomic context

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    See LOC4331174 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (35750089..35753957)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (35251398..35255206)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene bet1-like SNARE 1-1 Neighboring gene AT-hook motif nuclear-localized protein 20 Neighboring gene small nucleolar RNA R24 Neighboring gene large ribosomal subunit protein eL28z Neighboring gene zinc finger protein 11

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of an ethylene receptor homolog gene from rice. Cao W, et al. Sci China C Life Sci, 2003 Aug. PMID 21072609
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ethylene binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ethylene receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphorelay sensor kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phosphorelay signal transduction system IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to ethylene IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ethylene receptor 3
    Names
    LOC_Os02g57530
    P0474F11.19-1
    P0474F11.19-2
    ethylene receptor-like protein 2
    putative ethylene receptor-like protein 2
    NP_001388941.1
    NP_001388942.1
    XP_015626572.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402012.1 → NP_001388941.1  ethylene receptor 3 isoform 1 precursor

      Status: VALIDATED

      Source sequence(s)
      AF420318, AK111520, CI194934, CI582766, CI639379

    2. NM_001402013.1 → NP_001388942.1  ethylene receptor 3 isoform 2 precursor

      Status: VALIDATED

      Source sequence(s)
      AF420318, AK111520, CI106198, CI191462, CI564206

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      35750089..35753957
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771086.3 → XP_015626572.1  ethylene receptor 3 isoform X1

      UniProtKB/Swiss-Prot
      A0A0P0VRB9, B8AF44, Q0DWC7, Q6K707, Q6K708, Q6T5K2, Q944U1
      Conserved Domains (3) summary
      cd00156
      Location:727 → 833
      REC; Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; ...
      pfam00512
      Location:449 → 509
      HisKA; His Kinase A (phospho-acceptor) domain
      pfam01590
      Location:269 → 413
      GAF; GAF domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0DWC7.1 GenPept UniProtKB/Swiss-Prot:Q0DWC7

    Gene LinkOut

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    Research Materials