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    LOC4352713 uncharacterized LOC4352713 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352713, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4352713
    Gene description
    uncharacterized LOC4352713
    Locus tag
    OSNPB_120599900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flower buds (RPKM 6.3), flowers (RPKM 5.4) and 3 other tissues See more
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    Genomic context

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    See LOC4352713 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (25947497..25953325)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (25235981..25240696)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136354648 Neighboring gene pectinesterase inhibitor 8-like Neighboring gene uncharacterized LOC4352712 Neighboring gene uncharacterized LOC4352715 Neighboring gene E3 ubiquitin protein ligase DRIP2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4352713
    Names
    Os12g0599900
    ankyrin-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      25947497..25953325
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015763531.3 → XP_015619017.1  uncharacterized protein LOC4352713 isoform X1

      UniProtKB/TrEMBL
      B8BMU9, Q0IM45, Q2QML4
      Conserved Domains (4) summary
      PLN03088
      Location:297 → 420
      PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
      sd00006
      Location:329 → 359
      TPR; TPR repeat [structural motif]
      sd00045
      Location:71 → 102
      ANK; ANK repeat [structural motif]
      cl39094
      Location:85 → 257
      Ank_2; Ankyrin repeats (3 copies)

    2. XM_015763533.3 → XP_015619019.1  uncharacterized protein LOC4352713 isoform X2

      UniProtKB/TrEMBL
      B8BMU9
      Conserved Domains (6) summary
      cd00204
      Location:34 → 157
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      sd00006
      Location:329 → 359
      TPR; TPR repeat [structural motif]
      pfam12796
      Location:42 → 132
      Ank_2; Ankyrin repeats (3 copies)
      pfam13414
      Location:300 → 361
      TPR_11; TPR repeat
      pfam13637
      Location:7 → 58
      Ank_4; Ankyrin repeats (many copies)
      sd00045
      Location:71 → 102
      ANK; ANK repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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