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    LOC4342832 uncharacterized LOC4342832 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342832, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4342832
    Gene description
    uncharacterized LOC4342832
    Locus tag
    OSNPB_070248800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 20.8), leaves before flowering (RPKM 16.5) and 6 other tissues See more
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    Genomic context

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    See LOC4342832 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (8345392..8359529, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (8264828..8278983, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107281520 Neighboring gene wall-associated receptor kinase 2 Neighboring gene small nucleolar RNA snoR127 Neighboring gene pentatricopeptide repeat-containing protein At3g06920 Neighboring gene transfer RNA glutamic acid (anticodon CUC)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4342832
    Names
    Os07g0248800
    Os07g0248900
    P0021G06.102
    P0639B07.31

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      8345392..8359529 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791858.3 → XP_015647344.1  uncharacterized protein LOC4342832 isoform X4

      UniProtKB/TrEMBL
      A0A5S6RDC0, Q33BJ2, Q8S607
      Conserved Domains (1) summary
      pfam09741
      Location:48 → 305
      DUF2045; Uncharacterized conserved protein (DUF2045)

    2. XM_015791856.3 → XP_015647342.1  uncharacterized protein LOC4342832 isoform X2

      UniProtKB/TrEMBL
      A0A0P0X4B3, Q7XHS9
      Conserved Domains (1) summary
      pfam09741
      Location:126 → 383
      DUF2045; Uncharacterized conserved protein (DUF2045)

    3. XM_015791857.3 → XP_015647343.1  uncharacterized protein LOC4342832 isoform X3

      UniProtKB/TrEMBL
      A0A0P0X4B3, Q7XHS9
      Conserved Domains (1) summary
      pfam09741
      Location:116 → 373
      DUF2045; Uncharacterized conserved protein (DUF2045)

    4. XM_015791854.3 → XP_015647340.1  uncharacterized protein LOC4342832 isoform X1

      Conserved Domains (1) summary
      pfam09741
      Location:144 → 401
      DUF2045; Uncharacterized conserved protein (DUF2045)

    5. XM_066312570.1 → XP_066168667.1  uncharacterized protein LOC4342832 isoform X6

    6. XM_026026816.2 → XP_025882601.1  uncharacterized protein LOC4342832 isoform X6

      UniProtKB/TrEMBL
      A0A5S6RDC0, Q33BJ2, Q8S607
      Conserved Domains (1) summary
      pfam09741
      Location:28 → 285
      DUF2045; Uncharacterized conserved protein (DUF2045)

    7. XM_015791859.3 → XP_015647345.1  uncharacterized protein LOC4342832 isoform X5

      UniProtKB/TrEMBL
      B8B4S1
      Conserved Domains (1) summary
      pfam03108
      Location:298 → 335
      DBD_Tnp_Mut; MuDR family transposase

    RNA

    1. XR_001547731.3 RNA Sequence

    2. XR_010742656.1 RNA Sequence

    3. XR_010742657.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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