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    LOC4328632 protein DNA-DAMAGE INDUCIBLE 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328632, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4328632
    Gene description
    protein DNA-DAMAGE INDUCIBLE 1
    Locus tag
    OSNPB_020198600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 39.3), leaves after flowering (RPKM 35.1) and 6 other tissues See more
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    Genomic context

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    See LOC4328632 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (5534604..5539245)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (5523974..5528721)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4328630 Neighboring gene uncharacterized LOC4328631 Neighboring gene subtilisin-like protease SBT5.3 Neighboring gene uncharacterized LOC4328634

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables aspartic-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein DNA-DAMAGE INDUCIBLE 1
    Names
    DNA damage-inducible protein 1
    Os02g0198600
    P0026H03.19
    putative DNA-damage inducible protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      5534604..5539245
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772171.3 → XP_015627657.1  protein DNA-DAMAGE INDUCIBLE 1

      UniProtKB/TrEMBL
      A2X229, A3A472, Q0E315, Q6H734
      Conserved Domains (4) summary
      cd05479
      Location:182 → 305
      RP_DDI; retropepsin-like domain of DNA damage inducible protein
      cd14309
      Location:378 → 413
      UBA_scDdi1_like; UBA domain found in Saccharomyces cerevisiae DNA-damage response protein Ddi1 and similar proteins
      TIGR00601
      Location:339 → 415
      rad23; UV excision repair protein Rad23
      cd01796
      Location:1 → 71
      Ubl_Ddi1_like; ubiquitin-like (Ubl) domain found in the eukaryotic Ddi1 family
    Nucleotide Protein
    Heading Accession and Version

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