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    LOC9266987 cytochrome b561 and DOMON domain-containing protein At3g61750 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9266987, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC9266987
    Gene description
    cytochrome b561 and DOMON domain-containing protein At3g61750
    Locus tag
    OSNPB_050237200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 2.3), flowers (RPKM 1.8) and 6 other tissues See more
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    Genomic context

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    See LOC9266987 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (8405893..8411252, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (8371821..8377501, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112939024 Neighboring gene cyclin-A1-4-like Neighboring gene serine/threonine-protein kinase AGC1-7 Neighboring gene achilleol B synthase-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    cytochrome b561 and DOMON domain-containing protein At3g61750
    Names
    Os05g0237200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      8405893..8411252 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015782081.3 → XP_015637567.1  cytochrome b561 and DOMON domain-containing protein At3g61750

      UniProtKB/TrEMBL
      A0A0P0WJK7
      Conserved Domains (2) summary
      cd08760
      Location:184 → 359
      Cyt_b561_FRRS1_like; Eukaryotic cytochrome b(561), including the FRRS1 gene product
      cl14783
      Location:54 → 184
      DOMON_like; Domon-like ligand-binding domains

    RNA

    1. XR_010741512.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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