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    LOC4343885 exportin-T-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343885, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4343885
    Gene description
    exportin-T-like
    Locus tag
    OSNPB_070613300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1003_H02.130
    Expression
    Ubiquitous expression in flower buds (RPKM 9.6), leaves before flowering (RPKM 8.8) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (25464864..25473564)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (25239771..25248059)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene probable GTP diphosphokinase RSH3, chloroplastic Neighboring gene 60S ribosomal protein L27a-2 Neighboring gene serine/threonine-protein kinase RIPK Neighboring gene uncharacterized LOC136357348 Neighboring gene uncharacterized LOC136357347

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables small GTPase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables tRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tRNA re-export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nuclear matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of nuclear pore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    exportin-T
    Names
    Exportin(tRNA)
    LOC_Os07g42180
    P0616D06.103
    Protein PAUSED homolog
    putative exportin, tRNA (nuclear export receptor for tRNAs)
    tRNA exportin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403704.1 → NP_001390633.1  exportin-T

      Status: VALIDATED

      Source sequence(s)
      AK059512, AK099895, AK106898, CI098377
      UniProtKB/Swiss-Prot
      A0A0P0X8S3, Q8GTZ0, Q8H3A7
      UniProtKB/TrEMBL
      A2YNM7

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      25464864..25473564
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8H3A7.1 GenPept UniProtKB/Swiss-Prot:Q8H3A7

    Gene LinkOut

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    Research Materials