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    LOC4343890 protein STRICTOSIDINE SYNTHASE-LIKE 4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343890, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4343890
    Gene description
    protein STRICTOSIDINE SYNTHASE-LIKE 4
    Locus tag
    OSNPB_070614000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in mature seeds (RPKM 73.1), roots after flowering (RPKM 21.3) and 5 other tissues See more
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    Genomic context

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    See LOC4343890 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (25512693..25515131)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (25287500..25290041)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene U2 spliceosomal RNA Neighboring gene U2 spliceosomal RNA Neighboring gene proteasome subunit alpha type-6 Neighboring gene uncharacterized LOC4343892 Neighboring gene uncharacterized LOC4343893

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables strictosidine synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endomembrane system IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein STRICTOSIDINE SYNTHASE-LIKE 4
    Names
    ABC transporter permease protein-like protein
    Os07g0614000
    P0616D06.112-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      25512693..25515131
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789067.3 → XP_015644553.1  protein STRICTOSIDINE SYNTHASE-LIKE 4

      UniProtKB/TrEMBL
      A2YNN2, Q0D4P9, Q8H3A4
      Conserved Domains (2) summary
      COG3386
      Location:53 → 271
      YvrE; Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]
      cl22863
      Location:150 → 234
      Str_synth; Strictosidine synthase
    Nucleotide Protein
    Heading Accession and Version

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