U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4341535 ribose-phosphate pyrophosphokinase 2, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341535, updated on 16-Jul-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4341535
    Gene description
    ribose-phosphate pyrophosphokinase 2, chloroplastic-like
    Locus tag
    OSNPB_060617800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in mature seeds (RPKM 32.4), flower buds (RPKM 22.9) and 6 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4341535 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (25651816..25655967, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (24789474..24793560, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107281306 Neighboring gene uncharacterized LOC136357077 Neighboring gene non-structural maintenance of chromosomes element 4 homolog A Neighboring gene zinc finger CCCH domain-containing protein 44-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables magnesium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ribose phosphate diphosphokinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in 5-phosphoribose 1-diphosphate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in purine nucleotide biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ribonucleoside monophosphate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of ribose phosphate diphosphokinase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    ribose-phosphate pyrophosphokinase 2, chloroplastic
    Names
    LOC_Os06g41360
    P0012B02.3-1
    P0012B02.3-2
    Phosphoribosyl pyrophosphate synthase 2
    putative phosphoribosyl pyrophosphate synthase
    NP_001389809.1
    NP_001389810.1
    XP_015644181.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402880.1 → NP_001389809.1  ribose-phosphate pyrophosphokinase 2, chloroplastic isoform 1

      Status: VALIDATED

      Source sequence(s)
      AK066802, AP014962, CB677481, CI416280, CI672827
      UniProtKB/Swiss-Prot
      Q69XQ6, Q69XQ7
      UniProtKB/TrEMBL
      A2YF17, A3BDK5

    2. NM_001402881.1 → NP_001389810.1  ribose-phosphate pyrophosphokinase 2, chloroplastic isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK066802, AP014962, CB677481, CI416280, CI672827
      UniProtKB/TrEMBL
      B7EDK6, Q0DAX8

    RNA

    1. NR_175314.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK066802, AP014962, CB677481, CI328259, CI416280, CI672827

    2. NR_175315.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK066802, AK067505, AP014962, CB677481, CI416280, CI672827

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      25651816..25655967 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788695.3 → XP_015644181.1  ribose-phosphate pyrophosphokinase 2, chloroplastic isoform X1

      Conserved Domains (1) summary
      PLN02369
      Location:99 → 353
      PLN02369; ribose-phosphate pyrophosphokinase

    RNA

    1. XR_001547006.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q69XQ6.2 GenPept UniProtKB/Swiss-Prot:Q69XQ6

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials