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    LOC4337394 thioredoxin X, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337394, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4337394
    Gene description
    thioredoxin X, chloroplastic-like
    Locus tag
    OSNPB_040676100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    trx-x; OsTrxx; OsTrx16
    Expression
    Broad expression in leaves before flowering (RPKM 61.3), roots after flowering (RPKM 52.8) and 5 other tissues See more
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (35033431..35035231)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (34513550..34515358)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene F-box/FBD/LRR-repeat protein At1g13570 Neighboring gene plastid division protein CDP1, chloroplastic Neighboring gene pentatricopeptide repeat-containing protein At2g33680 Neighboring gene dihydroorotate dehydrogenase (quinone), mitochondrial-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Rice NTRC is a high-efficiency redox system for chloroplast protection against oxidative damage. Pérez-Ruiz JM, et al. Plant Cell, 2006 Sep. PMID 16891402, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein-disulfide reductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    thioredoxin X, chloroplastic
    Names
    LOC_Os04g57930
    OSJNBa0064G10.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419970.1 → NP_001406899.1  thioredoxin X, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AK288094, AP014960, CI442559
      UniProtKB/Swiss-Prot
      A0A0P0WGM0, Q2MCJ3, Q7XKD0
      UniProtKB/TrEMBL
      A2XYX7, Q259H6

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      35033431..35035231
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7XKD0.1 GenPept UniProtKB/Swiss-Prot:Q7XKD0

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