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    LOC4327311 uncharacterized LOC4327311 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327311, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4327311
    Gene description
    uncharacterized LOC4327311
    Locus tag
    OSNPB_010193600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0001B06.4
    Expression
    Broad expression in leaves before flowering (RPKM 16.2), leaves after flowering (RPKM 7.7) and 6 other tissues See more
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    Genomic context

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    See LOC4327311 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (5031856..5036577, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (5021046..5025715, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4327309 Neighboring gene F-box/LRR-repeat protein At4g29420 Neighboring gene protein ALWAYS EARLY 3 Neighboring gene uncharacterized LOC4327313 Neighboring gene protein IQ-DOMAIN 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4327311
    Names
    Os01g0193600
    P0671B11.35
    putative RNA methyltransferase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      5031856..5036577 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770128.3 → XP_015625614.1  uncharacterized protein LOC4327311

      UniProtKB/TrEMBL
      A0A0P0UZC6, B9ETM0, Q0JPY2, Q9FEB7
      Conserved Domains (1) summary
      COG2265
      Location:60 → 550
      TrmA; tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure and biogenesis]

    2. XM_015770120.3 → XP_015625606.1  uncharacterized protein LOC4327311

      UniProtKB/TrEMBL
      A0A0P0UZC6, B9ETM0, Q0JPY2, Q9FEB7
      Conserved Domains (1) summary
      COG2265
      Location:60 → 550
      TrmA; tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein
    Heading Accession and Version

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