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    LOC4346160 uncharacterized LOC4346160 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346160, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4346160
    Gene description
    uncharacterized LOC4346160
    Locus tag
    OSNPB_080536100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4346160 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (26932055..26937655)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (26785462..26791062)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like Neighboring gene uncharacterized LOC136351378 Neighboring gene CASP-like protein UU-1 Neighboring gene zinc finger protein CONSTANS-LIKE 14

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized LOC4346160
    Names
    OSJNBa0033D24.31-1
    OSJNBa0033D24.31-2
    OSJNBa0033D24.31-3
    Os08g0536100
    P0665C04.12-1
    P0665C04.12-2
    P0665C04.12-3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403677.1 → NP_001390606.1  uncharacterized LOC4346160

      Status: VALIDATED

      Source sequence(s)
      AK061684, AK067265, AK102567, CI568014, CI668472
      UniProtKB/TrEMBL
      B7ETC1, Q6Z1G6

    2. NM_001403678.1 → NP_001390607.1  uncharacterized LOC4346160

      Status: VALIDATED

      Source sequence(s)
      AK061684, AK067265, AK102567, CI568014, CI584450, CI668472
      UniProtKB/TrEMBL
      B7ETC1, Q6Z1G6

    RNA

    1. NR_175399.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK061684, AK067265, CI568014, CI668472

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      26932055..26937655
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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