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    LOC4339942 uncharacterized LOC4339942 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339942, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4339942
    Gene description
    uncharacterized LOC4339942
    Locus tag
    OSNPB_060119100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0660D08.4
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    Genomic context

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    See LOC4339942 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (1194042..1199053)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (1039946..1042714)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107278138 Neighboring gene uncharacterized LOC136356884 Neighboring gene uncharacterized LOC4339943 Neighboring gene aspartyl protease family protein At5g10770-like Neighboring gene aspartyl protease family protein At5g10770

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4339942
    Names
    OSJNBa0062J13.35
    Os06g0119100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      1194042..1199053
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015786030.3 → XP_015641516.1  uncharacterized protein LOC4339942

      UniProtKB/TrEMBL
      A0A0N7KLF5, A0A0P0WS51, A2Y8M0, Q5VPR2, Q5VQA6
      Conserved Domains (2) summary
      pfam04578
      Location:720 → 775
      DUF594; Protein of unknown function, DUF594
      pfam13968
      Location:283 → 509
      DUF4220; Domain of unknown function (DUF4220)
    Nucleotide Protein
    Heading Accession and Version

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