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    LOC4352496 calmodulin-binding protein 60 A [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352496, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4352496
    Gene description
    calmodulin-binding protein 60 A
    Locus tag
    OSNPB_120556300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4352496 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (23323460..23327939)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (22635286..22640288)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene protein DEHYDRATION-INDUCED 19 homolog 4 Neighboring gene protein SAR DEFICIENT 1 Neighboring gene uncharacterized LOC4352497 Neighboring gene calmodulin-binding protein 60 D

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calmodulin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of salicylic acid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calmodulin-binding protein 60 A
    Names
    Os12g0556300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      23323460..23327939
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015763397.3 → XP_015618883.1  calmodulin-binding protein 60 A isoform X1

      UniProtKB/TrEMBL
      A2ZLJ9, Q0IMP4, Q2QNS2
      Conserved Domains (1) summary
      pfam07887
      Location:147 → 439
      Calmodulin_bind; Calmodulin binding protein-like

    2. XM_015763398.3 → XP_015618884.1  calmodulin-binding protein 60 A isoform X2

      UniProtKB/TrEMBL
      A2ZLJ9
      Conserved Domains (1) summary
      pfam07887
      Location:147 → 439
      Calmodulin_bind; Calmodulin binding protein-like
    Nucleotide Protein
    Heading Accession and Version

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