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    LOC4338491 protein G1-like9 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338491, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4338491
    Gene description
    protein G1-like9
    Locus tag
    OSNPB_050347400
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    G1L9
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    Genomic context

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    See LOC4338491 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (16454900..16456221, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (16362681..16364067, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene transcription initiation factor TFIID subunit 7 Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene NAD(P)H-quinone oxidoreductase subunit L, chloroplastic Neighboring gene uncharacterized LOC107280959 Neighboring gene putative wall-associated receptor kinase-like 16

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The homeotic gene long sterile lemma (G1) specifies sterile lemma identity in the rice spikelet. Yoshida A, et al. Proc Natl Acad Sci U S A, 2009 Nov 24. PMID 19901325, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in mRNA transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to light stimulus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein G1-like9
    Names
    B1164G01.10
    G1-like9 protein
    LOC_Os05g28040
    OSJNBb0052F16.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001420374.1 → NP_001407303.1  protein G1-like9

      Status: VALIDATED

      Source sequence(s)
      AB512498, CI167936, CI309546
      UniProtKB/Swiss-Prot
      A0A0P0WLA5, A2Y3I2, Q5W659

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      16454900..16456221 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5W659.1 GenPept UniProtKB/Swiss-Prot:Q5W659

    Gene LinkOut

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