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    LOC4337554 methionine S-methyltransferase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337554, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4337554
    Gene description
    methionine S-methyltransferase
    Locus tag
    OSNPB_050105000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4337554 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (275867..286080, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (267956..278070, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 3 subunit F Neighboring gene E3 ubiquitin-protein ligase CHIP Neighboring gene uncharacterized LOC112939029 Neighboring gene ras-related protein RABA2a Neighboring gene GTP-binding protein YPTM1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    methionine S-methyltransferase
    Names
    Os05g0105000
    Os05g0105050

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      275867..286080 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015783676.3 → XP_015639162.1  methionine S-methyltransferase isoform X1

      UniProtKB/TrEMBL
      B8AWY8
      Conserved Domains (1) summary
      PLN02672
      Location:8 → 1079
      PLN02672; methionine S-methyltransferase

    2. XM_015783677.3 → XP_015639163.1  methionine S-methyltransferase isoform X2

      UniProtKB/TrEMBL
      A0A0P0WH48, B8AWY8, Q65XI9, Q75M18
      Conserved Domains (1) summary
      PLN02672
      Location:1 → 1073
      PLN02672; methionine S-methyltransferase
    Nucleotide Protein
    Heading Accession and Version

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