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    LOC4328666 uncharacterized LOC4328666 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328666, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4328666
    Gene description
    uncharacterized LOC4328666
    Locus tag
    OSNPB_020203700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1135_F06.29
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 55.2), roots after flowering (RPKM 38.0) and 6 other tissues See more
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    Genomic context

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    See LOC4328666 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (5809619..5817209, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (5798892..5806523, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4328665 Neighboring gene uncharacterized LOC136355115 Neighboring gene uncharacterized LOC4328667 Neighboring gene uncharacterized LOC9266610

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4328666
    Names
    Os02g0203700
    P0544H11.11
    zinc finger protein SRZ1
    zinc finger transcription factor ZFP30

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      5809619..5817209 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066307903.1 → XP_066164000.1  uncharacterized protein LOC4328666 isoform X2

      UniProtKB/TrEMBL
      A3A4B0, Q6Z6E6

    2. XM_015772030.3 → XP_015627516.1  uncharacterized protein LOC4328666 isoform X1

      UniProtKB/TrEMBL
      Q84U93
      Conserved Domains (2) summary
      sd00025
      Location:8 → 27
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam00641
      Location:131 → 160
      zf-RanBP; Zn-finger in Ran binding protein and others

    3. XM_015772032.2 → XP_015627518.1  uncharacterized protein LOC4328666 isoform X2

      UniProtKB/TrEMBL
      A3A4B0, Q6Z6E6, Q84U93
      Conserved Domains (2) summary
      sd00025
      Location:8 → 27
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam00641
      Location:131 → 160
      zf-RanBP; Zn-finger in Ran binding protein and others

    4. XM_015772029.2 → XP_015627515.1  uncharacterized protein LOC4328666 isoform X1

      UniProtKB/TrEMBL
      Q84U93
      Conserved Domains (2) summary
      sd00025
      Location:8 → 27
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam00641
      Location:131 → 160
      zf-RanBP; Zn-finger in Ran binding protein and others

    5. XM_015772033.3 → XP_015627519.1  uncharacterized protein LOC4328666 isoform X2

      UniProtKB/TrEMBL
      A3A4B0, Q6Z6E6, Q84U93
      Conserved Domains (2) summary
      sd00025
      Location:8 → 27
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam00641
      Location:131 → 160
      zf-RanBP; Zn-finger in Ran binding protein and others

    6. XM_015772031.3 → XP_015627517.1  uncharacterized protein LOC4328666 isoform X1

      UniProtKB/TrEMBL
      Q84U93
      Conserved Domains (2) summary
      sd00025
      Location:8 → 27
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam00641
      Location:131 → 160
      zf-RanBP; Zn-finger in Ran binding protein and others
    Nucleotide Protein
    Heading Accession and Version

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