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    LOC4352824 uncharacterized LOC4352824 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352824, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4352824
    Gene description
    uncharacterized LOC4352824
    Locus tag
    OSNPB_120621900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in mature seeds (RPKM 44.0), milk grains (RPKM 29.9) and 6 other tissues See more
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    Genomic context

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    See LOC4352824 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (27266165..27273579)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (26548424..26555895)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136354728 Neighboring gene uncharacterized LOC4352823 Neighboring gene uncharacterized LOC4352825 Neighboring gene meiotic recombination protein SPO11-4-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metallopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of COP9 signalosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4352824
    Names
    Os12g0621900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      27266165..27273579
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765101.2 → XP_015620587.1  uncharacterized protein LOC4352824 isoform X3

      UniProtKB/TrEMBL
      H2KX67, Q2QM05
      Conserved Domains (1) summary
      cl13996
      Location:1 → 135
      MPN; Mpr1p, Pad1p N-terminal (MPN) domains

    2. XM_015765099.3 → XP_015620585.3  uncharacterized protein LOC4352824 isoform X1

      UniProtKB/TrEMBL
      A2ZMW3, A3CJK2, Q2QM04

    3. XM_015765100.3 → XP_015620586.3  uncharacterized protein LOC4352824 isoform X2

      UniProtKB/TrEMBL
      A2ZMW3, A3CJK2, Q2QM03
    Nucleotide Protein
    Heading Accession and Version

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