U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4331674 ABC transporter G family member 22 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331674, updated on 21-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4331674
    Gene description
    ABC transporter G family member 22
    Locus tag
    OSNPB_030157400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in leaves before flowering (RPKM 41.7), roots after flowering (RPKM 41.2) and 3 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4331674 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (3075980..3085984, complement)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4331671 Neighboring gene cell number regulator 13 Neighboring gene FH protein interacting protein FIP2 Neighboring gene inactive protein RESTRICTED TEV MOVEMENT 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ABC-type transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    ABC transporter G family member 22
    Names
    Os03g0157400

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

      Range
      3075980..3085984 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777030.1 → XP_015632516.1  ABC transporter G family member 22 isoform X2

      UniProtKB/TrEMBL
      B8ANU1
      Conserved Domains (3) summary
      cd03213
      Location:172 → 400
      ABCG_EPDR; Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily
      PLN03211
      Location:165 → 742
      PLN03211; ABC transporter G-25; Provisional
      pfam01061
      Location:496 → 698
      ABC2_membrane; ABC-2 type transporter

    2. XM_015777029.1 → XP_015632515.1  ABC transporter G family member 22 isoform X1

      UniProtKB/TrEMBL
      B8ANU1, Q0DV10, Q10RJ4
      Conserved Domains (1) summary
      PLN03211
      Location:165 → 767
      PLN03211; ABC transporter G-25; Provisional

    3. XM_015777031.1 → XP_015632517.1  ABC transporter G family member 22 isoform X3

      UniProtKB/TrEMBL
      Q8LMQ5
      Conserved Domains (3) summary
      cd03213
      Location:172 → 400
      ABCG_EPDR; Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily
      COG1122
      Location:184 → 404
      EcfA2; Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only]
      pfam01061
      Location:521 → 662
      ABC2_membrane; ABC-2 type transporter

    4. XM_015777032.2 → XP_015632518.1  ABC transporter G family member 22 isoform X4

      UniProtKB/TrEMBL
      Q8LMQ5
      Conserved Domains (3) summary
      cd03213
      Location:172 → 400
      ABCG_EPDR; Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily
      COG1122
      Location:184 → 404
      EcfA2; Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only]
      pfam01061
      Location:521 → 662
      ABC2_membrane; ABC-2 type transporter
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials