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    LOC4328445 uncharacterized LOC4328445 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328445, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4328445
    Gene description
    uncharacterized LOC4328445
    Locus tag
    OSNPB_020170900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1116_A06.34-1
    Expression
    Broad expression in flowers (RPKM 12.2), flower buds (RPKM 8.0) and 6 other tissues See more
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    Genomic context

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    See LOC4328445 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (3865188..3872924, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (3855933..3863872, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene nuclear transcription factor Y subunit C-4-like Neighboring gene uncharacterized LOC9267856 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase GAPCP1, chloroplastic Neighboring gene uncharacterized LOC112937803

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4328445
    Names
    Os02g0170900
    P0030G02.24-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      3865188..3872924 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767957.3 → XP_015623443.1  uncharacterized protein LOC4328445

      UniProtKB/TrEMBL
      B9F3A3, Q0E3J4, Q6H704
      Conserved Domains (2) summary
      cd00254
      Location:294 → 387
      LT-like; lytic transglycosylase(LT)-like domain
      cl00222
      Location:71 → 173
      Lyz-like; lysozyme-like domains

    2. XM_015767958.3 → XP_015623444.1  uncharacterized protein LOC4328445

      UniProtKB/TrEMBL
      B9F3A3, Q0E3J4, Q6H704
      Conserved Domains (2) summary
      cd00254
      Location:294 → 387
      LT-like; lytic transglycosylase(LT)-like domain
      cl00222
      Location:71 → 173
      Lyz-like; lysozyme-like domains
    Nucleotide Protein
    Heading Accession and Version

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