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    LOC4336547 uncharacterized LOC4336547 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336547, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4336547
    Gene description
    uncharacterized LOC4336547
    Locus tag
    OSNPB_040542900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4336547 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (27695982..27699810)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (27191001..27194820)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107280775 Neighboring gene probable metal-nicotianamine transporter YSL16 Neighboring gene probable serine/threonine-protein kinase PBL19 Neighboring gene uncharacterized LOC4336550 Neighboring gene uncharacterized LOC4336551

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A network of rice genes associated with stress response and seed development. Cooper B, et al. Proc Natl Acad Sci U S A, 2003 Apr 15. PMID 12684538, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA endonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4336547
    Names
    Os04g0542900
    poly(U)-specific endoribonuclease-B
    putative serine protease-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      27695982..27699810
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015780081.3 → XP_015635567.1  uncharacterized protein LOC4336547

      UniProtKB/TrEMBL
      A0A0P0WCZ7, Q0JBC2, Q7XN53
      Conserved Domains (2) summary
      PRK10811
      Location:111 → 190
      rne; ribonuclease E; Reviewed
      pfam09412
      Location:249 → 515
      XendoU; Endoribonuclease XendoU
    Nucleotide Protein
    Heading Accession and Version

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