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    LOC4325243 probable LRR receptor-like serine/threonine-protein kinase At1g06840 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325243, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4325243
    Gene description
    probable LRR receptor-like serine/threonine-protein kinase At1g06840
    Locus tag
    OSNPB_010960400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 62.1), leaves after flowering (RPKM 39.0) and 5 other tissues See more
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    Genomic context

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    See LOC4325243 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (42988467..43001570, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (42336281..42349397, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene nitrate regulatory gene2 protein Neighboring gene uncharacterized LOC4325242 Neighboring gene E3 ubiquitin-protein ligase RGLG3 Neighboring gene transfer RNA arginine (anticodon UCU)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable LRR receptor-like serine/threonine-protein kinase At1g06840
    Names
    Os01g0960400
    P0401G10.25-1
    P0401G10.25-2
    putative receptor-like protein kinase 1
    receptor protein kinase-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      42988467..43001570 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015793686.3 → XP_015649172.1  probable LRR receptor-like serine/threonine-protein kinase At1g06840 isoform X2

      UniProtKB/TrEMBL
      A0A0N7KEG2, B8A9K1, B9EWK4, Q5JN27
      Conserved Domains (5) summary
      smart00221
      Location:618 → 881
      STYKc; Protein kinase; unclassified specificity
      cd00116
      Location:100 → 358
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      cd14066
      Location:618 → 884
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      sd00033
      Location:127 → 174
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:269 → 328
      LRR_8; Leucine rich repeat

    2. XM_066306814.1 → XP_066162911.1  probable LRR receptor-like serine/threonine-protein kinase At1g06840 isoform X1

    3. XM_026022490.2 → XP_025878275.1  probable LRR receptor-like serine/threonine-protein kinase At1g06840 isoform X1

      UniProtKB/TrEMBL
      B8A9K1
      Conserved Domains (3) summary
      cd14066
      Location:618 → 885
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      sd00033
      Location:127 → 174
      LRR_RI; leucine-rich repeat [structural motif]
      cl26793
      Location:12 → 358
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional

    4. XM_066306815.1 → XP_066162912.1  probable LRR receptor-like serine/threonine-protein kinase At1g06840 isoform X2

      UniProtKB/TrEMBL
      A0A0N7KEG2, B9EWK4, Q5JN27

    5. XM_066306816.1 → XP_066162913.1  probable LRR receptor-like serine/threonine-protein kinase At1g06840 isoform X2

      UniProtKB/TrEMBL
      A0A0N7KEG2, B9EWK4, Q5JN27

    6. XM_015793679.3 → XP_015649165.1  probable LRR receptor-like serine/threonine-protein kinase At1g06840 isoform X1

      UniProtKB/TrEMBL
      B8A9K1
      Conserved Domains (3) summary
      cd14066
      Location:618 → 885
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      sd00033
      Location:127 → 174
      LRR_RI; leucine-rich repeat [structural motif]
      cl26793
      Location:12 → 358
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    Nucleotide Protein
    Heading Accession and Version

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