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    LOC4344865 nucleolin 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344865, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4344865
    Gene description
    nucleolin 1-like
    Locus tag
    OSNPB_080192900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsJ_26324
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    Genomic context

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    See LOC4344865 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (5472780..5477195, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (5422258..5426681, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene SWR1 complex subunit 2 Neighboring gene transcription factor GTE7 Neighboring gene solanesyl-diphosphate synthase 1, mitochondrial-like Neighboring gene F-box protein SKIP19-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nucleolin 1
    Names
    LOC_Os08g09350
    OSJNBa0056O06.24
    Protein NUCLEOLIN LIKE 1
    putative nucleolin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422496.1 → NP_001409425.1  nucleolin 1

      Status: VALIDATED

      Source sequence(s)
      AK059471, AK103422, CI313326, CI773023
      UniProtKB/Swiss-Prot
      A0A0P0XCT5, Q6Z1C0
      UniProtKB/TrEMBL
      Q68Q07

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      5472780..5477195 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795396.3 → XP_015650882.1  nucleolin 1 isoform X1

      UniProtKB/TrEMBL
      A2YS16
      Conserved Domains (2) summary
      cd12451
      Location:413 → 491
      RRM2_NUCLs; RNA recognition motif 2 (RRM2) found in nucleolin-like proteins mainly from plants
      cl17169
      Location:313 → 389
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6Z1C0.1 GenPept UniProtKB/Swiss-Prot:Q6Z1C0

    Gene LinkOut

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