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    LOC4329160 uncharacterized LOC4329160 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329160, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4329160
    Gene description
    uncharacterized LOC4329160
    Locus tag
    OSNPB_020319300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 66.9), leaves after flowering (RPKM 51.8) and 6 other tissues See more
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    Genomic context

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    See LOC4329160 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (12767099..12770576, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (12731585..12735996, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene F-box/FBD/LRR-repeat protein At5g22700-like Neighboring gene protein MEI2-like 5 Neighboring gene uncharacterized LOC4329163 Neighboring gene plant cysteine oxidase 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glutathione transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4329160
    Names
    OSJNBa0086N11.18
    Os02g0319300
    putative glutathione transferase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      12767099..12770576 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015769985.3 → XP_015625471.1  uncharacterized protein LOC4329160 isoform X2

      UniProtKB/TrEMBL
      B8AGA6, B9F5B9
      Conserved Domains (4) summary
      cd03190
      Location:208 → 349
      GST_C_Omega_like; C-terminal, alpha helical domain of Class Omega-like Glutathione S-transferases
      COG0435
      Location:43 → 363
      ECM4; Glutathionyl-hydroquinone reductase [Energy production and conversion]
      pfam13409
      Location:91 → 193
      GST_N_2; Glutathione S-transferase, N-terminal domain
      cl00388
      Location:70 → 105
      Thioredoxin_like; Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold

    2. XM_015769983.3 → XP_015625469.2  uncharacterized protein LOC4329160 isoform X1

    Nucleotide Protein
    Heading Accession and Version

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