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    LOC4326838 neutral/alkaline invertase 1, mitochondrial-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326838, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4326838
    Gene description
    neutral/alkaline invertase 1, mitochondrial-like
    Locus tag
    OSNPB_010332100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in roots after flowering (RPKM 662.2), leaves after flowering (RPKM 362.5) and 3 other tissues See more
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    Genomic context

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    See LOC4326838 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (12913786..12917816)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (12870240..12874266)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene Golgi apparatus membrane protein-like protein ECHIDNA Neighboring gene uncharacterized LOC136354958 Neighboring gene gibberellin 2-beta-dioxygenase 2-like Neighboring gene serine carboxypeptidase-like 26 Neighboring gene serine carboxypeptidase-like 26

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables endo-alpha-N-acetylgalactosaminidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sucrose alpha-glucosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in sucrose catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    neutral/alkaline invertase 1, mitochondrial-like
    Names
    B1140D12.1-1
    B1140D12.1-2
    Os01g0332100
    P0489E06.39-1
    P0489E06.39-2
    neutral invertase-like protein
    putative neutral invertase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      12913786..12917816
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765739.2 → XP_015621225.1  neutral/alkaline invertase 1, mitochondrial-like

      UniProtKB/TrEMBL
      Q0JN33, Q5ZA22, Q5ZCZ3, Q84XG8
      Conserved Domains (1) summary
      pfam12899
      Location:150 → 586
      Glyco_hydro_100; Alkaline and neutral invertase
    Nucleotide Protein
    Heading Accession and Version

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