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    LOC4340772 nuclear transcription factor Y subunit B-10-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340772, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4340772
    Gene description
    nuclear transcription factor Y subunit B-10-like
    Locus tag
    OSNPB_060285200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsHAP3D
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    Genomic context

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    See LOC4340772 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (10314796..10315749)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (10137775..10138918)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene anther-specific protein BCP1 Neighboring gene fasciclin-like arabinogalactan protein 1 Neighboring gene probable L-type lectin-domain containing receptor kinase S.7 Neighboring gene uncharacterized LOC9269448

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification, characterization and interaction of HAP family genes in rice. Thirumurugan T, et al. Mol Genet Genomics, 2008 Mar. PMID 18193457
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CCAAT-binding factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear transcription factor Y subunit B-10-like
    Names
    HAP3 subunit of HAP complex
    HAP3 transcriptional-activator
    Os06g0285200
    P0491D10.32
    nuclear transcription factor Y subunit B-9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      10314796..10315749
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015787184.3 → XP_015642670.1  nuclear transcription factor Y subunit B-10-like

      UniProtKB/TrEMBL
      A0A0P0WVI4, Q5VNF4, Q6YNJ9
      Conserved Domains (1) summary
      pfam00808
      Location:36 → 99
      CBFD_NFYB_HMF; Histone-like transcription factor (CBF/NF-Y) and archaeal histone
    Nucleotide Protein
    Heading Accession and Version

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