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    LOC4350929 uncharacterized LOC4350929 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350929, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4350929
    Gene description
    uncharacterized LOC4350929
    Locus tag
    OSNPB_110616900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 7.1), flower buds (RPKM 4.9) and 6 other tissues See more
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    Genomic context

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    See LOC4350929 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (25953091..25961966)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (24001611..24010463)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene BTB/POZ and MATH domain-containing protein 1-like Neighboring gene uncharacterized LOC107279463 Neighboring gene U-box domain-containing protein 70 Neighboring gene uncharacterized LOC107277742 Neighboring gene uncharacterized LOC136353916 Neighboring gene uncharacterized LOC107275452

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    uncharacterized protein LOC4350929
    Names
    Os11g0616900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      25953091..25961966
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066305224.1 → XP_066161321.1  uncharacterized protein LOC4350929

    2. XM_066305227.1 → XP_066161324.1  uncharacterized protein LOC4350929

    3. XM_066305225.1 → XP_066161322.1  uncharacterized protein LOC4350929

    4. XM_066305228.1 → XP_066161325.1  uncharacterized protein LOC4350929

    5. XM_066305226.1 → XP_066161323.1  uncharacterized protein LOC4350929

    6. XM_066305229.1 → XP_066161326.1  uncharacterized protein LOC4350929

    7. XM_066305230.1 → XP_066161327.1  uncharacterized protein LOC4350929

    8. XM_066305231.1 → XP_066161328.1  uncharacterized protein LOC4350929

    9. XM_066305232.1 → XP_066161329.1  uncharacterized protein LOC4350929

    10. XM_015761898.3 → XP_015617384.1  uncharacterized protein LOC4350929

      UniProtKB/TrEMBL
      A0A0P0Y4A9, Q0IRL8

    11. XM_015761900.3 → XP_015617386.1  uncharacterized protein LOC4350929

      UniProtKB/TrEMBL
      A0A0P0Y4A9, Q0IRL8
    Nucleotide Protein
    Heading Accession and Version

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