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    LOC4349986 protein kinase STUNTED [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349986, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4349986
    Gene description
    protein kinase STUNTED
    Locus tag
    OSNPB_110194900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 15.4), flowers (RPKM 14.9) and 6 other tissues See more
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    Genomic context

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    See LOC4349986 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (4790245..4794123, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (4734961..4738865, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4349984 Neighboring gene DNA-directed RNA polymerases I, II, and III subunit RPABC5 Neighboring gene protein translocase subunit SECA2, chloroplastic Neighboring gene EID1-like F-box protein 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein kinase STUNTED
    Names
    Os11g0194900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      4790245..4794123 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066305370.1 → XP_066161467.1  protein kinase STUNTED isoform X6

    2. XM_066305368.1 → XP_066161465.1  protein kinase STUNTED isoform X4

    3. XM_066305369.1 → XP_066161466.1  protein kinase STUNTED isoform X5

    4. XM_015762527.3 → XP_015618013.1  protein kinase STUNTED isoform X2

      UniProtKB/TrEMBL
      B8ARG1
      Conserved Domains (3) summary
      pfam00069
      Location:397 → 655
      Pkinase; Protein kinase domain
      cl00292
      Location:36 → 184
      AANH_like; Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
      cl21453
      Location:398 → 666
      PKc_like; Protein Kinases, catalytic domain

    5. XM_015762528.3 → XP_015618014.1  protein kinase STUNTED isoform X3

      UniProtKB/TrEMBL
      B8ARG1
      Conserved Domains (3) summary
      pfam00069
      Location:397 → 655
      Pkinase; Protein kinase domain
      cl00292
      Location:36 → 184
      AANH_like; Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
      cl21453
      Location:398 → 666
      PKc_like; Protein Kinases, catalytic domain

    6. XM_015762526.3 → XP_015618012.1  protein kinase STUNTED isoform X1

      UniProtKB/TrEMBL
      A3C9F3, B8ARG1, Q53LH9
      Conserved Domains (3) summary
      pfam00069
      Location:398 → 656
      Pkinase; Protein kinase domain
      cl00292
      Location:36 → 185
      AANH_like; Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
      cl21453
      Location:399 → 667
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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