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    LOC4331608 probable aquaporin TIP1-1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331608, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4331608
    Gene description
    probable aquaporin TIP1-1
    Locus tag
    OSNPB_030146100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    AQP; YK333; rTIP1; TIP1-1; OsTIP1;1; aquaporin; OsJ_009057
    Expression
    Broad expression in mature seeds (RPKM 324.9), flower buds (RPKM 118.9) and 5 other tissues See more
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    Genomic context

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    See LOC4331608 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (2571620..2573477, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (2562832..2564663, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase RZFP34 Neighboring gene ras-related protein RABC2a Neighboring gene cyclin-dependent kinases regulatory subunit 1-like Neighboring gene pheophorbide a oxygenase, chloroplastic-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables water channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in water transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plant-type vacuole membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable aquaporin TIP1-1
    Names
    LOC_Os03g05290
    OSJNBa0067N01.16
    Tonoplast intrinsic protein 1-1
    water channel protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402043.1 → NP_001388972.1  probable aquaporin TIP1-1

      Status: VALIDATED

      Source sequence(s)
      AK104123, AU222896, CI267083, CI293882
      UniProtKB/Swiss-Prot
      P50156, Q10RT7, Q7G7J2
      UniProtKB/TrEMBL
      A2XCH7, A4ZYN4

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      2571620..2573477 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P50156.1 GenPept UniProtKB/Swiss-Prot:P50156

    Gene LinkOut

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    Research Materials