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    LOC4336327 adenine phosphoribosyltransferase 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336327, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4336327
    Gene description
    adenine phosphoribosyltransferase 2
    Locus tag
    OSNPB_040504000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flower buds (RPKM 47.6), roots before flowering (RPKM 33.9) and 5 other tissues See more
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    Genomic context

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    See LOC4336327 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (25663116..25668153)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (25165695..25170733)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase Neighboring gene uncharacterized LOC4336326 Neighboring gene uncharacterized LOC4336328 Neighboring gene AP2-like ethylene-responsive transcription factor BBM1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables adenine phosphoribosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in adenine salvage IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    adenine phosphoribosyltransferase 2
    Names
    Os04g0504000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      25663116..25668153
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781603.3 → XP_015637089.1  adenine phosphoribosyltransferase 2 isoform X1

      UniProtKB/TrEMBL
      A2XVA4, Q0JBX9, Q7F8Y9, Q84P57
      Conserved Domains (1) summary
      PLN02293
      Location:31 → 212
      PLN02293; adenine phosphoribosyltransferase

    2. XM_026025016.2 → XP_025880801.1  adenine phosphoribosyltransferase 2 isoform X2

      UniProtKB/TrEMBL
      A2XVA4
      Conserved Domains (1) summary
      PLN02293
      Location:31 → 175
      PLN02293; adenine phosphoribosyltransferase

    RNA

    1. XR_010740762.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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