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    LOC4338096 TPR repeat-containing thioredoxin TTL1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338096, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4338096
    Gene description
    TPR repeat-containing thioredoxin TTL1
    Locus tag
    OSNPB_050210600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in milk grains (RPKM 4.2), flowers (RPKM 3.2) and 5 other tissues See more
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    Genomic context

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    See LOC4338096 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (6881778..6885990)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (6858443..6862596)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene GDSL esterase/lipase At5g45910 Neighboring gene uncharacterized LOC4338095 Neighboring gene uncharacterized LOC9271398 Neighboring gene obtusifoliol 14-alpha demethylase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    TPR repeat-containing thioredoxin TTL1
    Names
    Os05g0210600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      6881778..6885990
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781956.3 → XP_015637442.1  TPR repeat-containing thioredoxin TTL1

      UniProtKB/TrEMBL
      B9FN34
      Conserved Domains (4) summary
      cd02947
      Location:557 → 644
      TRX_family; TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox ...
      TIGR00990
      Location:400 → 512
      3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)
      TIGR02917
      Location:187 → 544
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:451 → 481
      TPR; TPR repeat [structural motif]

    RNA

    1. XR_001545712.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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