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    LOC4331748 F-box/kelch-repeat protein At1g55270 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331748, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4331748
    Gene description
    F-box/kelch-repeat protein At1g55270
    Locus tag
    OSNPB_030167800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 7.8), leaves before flowering (RPKM 7.4) and 6 other tissues See more
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    Genomic context

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    See LOC4331748 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (3675320..3680406)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (3664618..3669904)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene fatty acyl-CoA reductase 2 Neighboring gene serine/threonine-protein phosphatase PP2A-4 catalytic subunit-like Neighboring gene uncharacterized LOC4331750 Neighboring gene late embryogenesis abundant protein, group 3 Neighboring gene uncharacterized LOC4331752 Neighboring gene uncharacterized LOC4331753

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    F-box/kelch-repeat protein At1g55270
    Names
    F-box domain and kelch repeat containing protein FBK11
    Os03g0167800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      3675320..3680406
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777790.3 → XP_015633276.1  F-box/kelch-repeat protein At1g55270 isoform X1

      UniProtKB/TrEMBL
      A3AEI2
      Conserved Domains (3) summary
      PHA03098
      Location:216 → 401
      PHA03098; kelch-like protein; Provisional
      sd00038
      Location:215 → 258
      Kelch; KELCH repeat [structural motif]
      pfam00646
      Location:122 → 159
      F-box; F-box domain

    2. XM_015777792.3 → XP_015633278.1  F-box/kelch-repeat protein At1g55270 isoform X2

      UniProtKB/TrEMBL
      B8APA1, Q0DUT9, Q10R89
      Conserved Domains (3) summary
      PHA03098
      Location:171 → 356
      PHA03098; kelch-like protein; Provisional
      sd00038
      Location:170 → 213
      Kelch; KELCH repeat [structural motif]
      pfam00646
      Location:77 → 114
      F-box; F-box domain

    3. XM_066308416.1 → XP_066164513.1  F-box/kelch-repeat protein At1g55270 isoform X3

      UniProtKB/TrEMBL
      B8APA1
    Nucleotide Protein
    Heading Accession and Version

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