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    LOC4337834 translocase of chloroplast 101, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337834, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4337834
    Gene description
    translocase of chloroplast 101, chloroplastic
    Locus tag
    OSNPB_050151400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves after flowering (RPKM 161.5), roots after flowering (RPKM 159.5) and 6 other tissues See more
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    Genomic context

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    See LOC4337834 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (2991495..2995856, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (2973686..2978063, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene translocator protein homolog Neighboring gene REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 Neighboring gene DNA-directed RNA polymerases II, IV and V subunit 12 Neighboring gene small nucleolar RNA snoR118 Neighboring gene uncharacterized LOC9268040

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein targeting to chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast outer membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    translocase of chloroplast 101, chloroplastic
    Names
    Os05g0151400
    translocase of chloroplast 159, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      2991495..2995856 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015783735.3 → XP_015639221.1  translocase of chloroplast 101, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0WIB0, B8AY53, Q0DKN6
      Conserved Domains (2) summary
      PTZ00341
      Location:240 → 436
      PTZ00341; Ring-infected erythrocyte surface antigen; Provisional
      TIGR00993
      Location:548 → 1299
      3a0901s04IAP86; chloroplast protein import component Toc86/159, G and M domains
    Nucleotide Protein
    Heading Accession and Version

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