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    LOC4339461 protein REVERSION-TO-ETHYLENE SENSITIVITY1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339461, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4339461
    Gene description
    protein REVERSION-TO-ETHYLENE SENSITIVITY1
    Locus tag
    OSNPB_050539800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 23.5), flower buds (RPKM 16.4) and 6 other tissues See more
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    Genomic context

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    See LOC4339461 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (26933752..26936848, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (26815556..26818793, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene probable ADP,ATP carrier protein At5g56450 Neighboring gene nucleosome assembly protein 1-2 Neighboring gene uncharacterized protein ycf36 Neighboring gene glycosyltransferase family protein 64 protein C5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of ethylene-activated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to ethylene IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein REVERSION-TO-ETHYLENE SENSITIVITY1
    Names
    Os05g0539800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      26933752..26936848 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785215.3 → XP_015640701.1  protein REVERSION-TO-ETHYLENE SENSITIVITY1

      UniProtKB/TrEMBL
      B8AW65, B9FLD2, Q0DGD3, Q53WK3
      Conserved Domains (1) summary
      pfam05608
      Location:43 → 178
      DUF778; Protein of unknown function (DUF778)

    2. XM_015785212.3 → XP_015640698.1  protein REVERSION-TO-ETHYLENE SENSITIVITY1

      UniProtKB/TrEMBL
      B8AW65, B9FLD2, Q0DGD3, Q53WK3
      Conserved Domains (1) summary
      pfam05608
      Location:43 → 178
      DUF778; Protein of unknown function (DUF778)

    3. XM_015785214.3 → XP_015640700.1  protein REVERSION-TO-ETHYLENE SENSITIVITY1

      UniProtKB/TrEMBL
      B8AW65, B9FLD2, Q0DGD3, Q53WK3
      Conserved Domains (1) summary
      pfam05608
      Location:43 → 178
      DUF778; Protein of unknown function (DUF778)

    4. XM_015785213.3 → XP_015640699.1  protein REVERSION-TO-ETHYLENE SENSITIVITY1

      UniProtKB/TrEMBL
      B8AW65, B9FLD2, Q0DGD3, Q53WK3
      Conserved Domains (1) summary
      pfam05608
      Location:43 → 178
      DUF778; Protein of unknown function (DUF778)
    Nucleotide Protein
    Heading Accession and Version

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