U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4342530 protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342530, updated on 12-Jul-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4342530
    Gene description
    protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1
    Locus tag
    OSNPB_070175100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1656_E11.131
    Expression
    Ubiquitous expression in flower buds (RPKM 14.8), leaves after flowering (RPKM 13.0) and 6 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4342530 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (4013413..4015164, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (3953185..3954909, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene non-specific lipid transfer protein GPI-anchored 5 Neighboring gene non-specific lipid transfer protein GPI-anchored 5 Neighboring gene FCS-Like Zinc finger 8 Neighboring gene potassium channel AKT3

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ESC/E(Z) complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of PRC1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1
    Names
    Os07g0175100

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      4013413..4015164 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789277.3 → XP_015644763.1  protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1

      UniProtKB/TrEMBL
      A0A0P0X343, Q0D898, Q8H572
      Conserved Domains (2) summary
      cl21459
      Location:135 → 181
      HTH; Helix-turn-helix domains
      cl21562
      Location:228 → 393
      DDE_Tnp_4; DDE superfamily endonuclease
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials