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    LOC9267710 protein OCTOPUS [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9267710, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC9267710
    Gene description
    protein OCTOPUS
    Locus tag
    OSNPB_110707900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 12.3), leaves before flowering (RPKM 10.2) and 6 other tissues See more
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    Genomic context

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    See LOC9267710 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (31019323..31021045, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (28965092..28973148, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4351227 Neighboring gene mitochondrial uncoupling protein 1 Neighboring gene uncharacterized LOC136351254 Neighboring gene laccase-22-like Neighboring gene laccase-22-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein OCTOPUS
    Names
    Os11g0707900
    Os11g0708000
    UPF0503 protein At3g09070, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      31019323..31021045 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026021113.2 → XP_025876898.1  protein OCTOPUS

      UniProtKB/TrEMBL
      A0A0P0Y5R0, Q2QZ11
      Conserved Domains (1) summary
      pfam05340
      Location:82 → 332
      DUF740; Protein of unknown function (DUF740)
    Nucleotide Protein
    Heading Accession and Version

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