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    LOC4338718 chitinase 2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338718, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4338718
    Gene description
    chitinase 2-like
    Locus tag
    OSNPB_050399300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    RC7; Cht2; Cht-2; OsChia1b; OsJ_18467; chitinase
    Expression
    Biased expression in roots before flowering (RPKM 53.8) and flower buds (RPKM 4.6) See more
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    Genomic context

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    See LOC4338718 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (19528355..19529814)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (19426400..19427922)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene endo-1,3;1,4-beta-D-glucanase Neighboring gene endo-1,3;1,4-beta-D-glucanase Neighboring gene chitinase 9 Neighboring gene chitinase 7-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Sequence variation, differential expression and chromosomal location of rice chitinase genes. Nishizawa Y, et al. Mol Gen Genet, 1993 Oct. PMID 7901749
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables chitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell wall macromolecule catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in chitin catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in defense response to fungus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chitinase 2
    Names
    Class I chitinase b
    LOC_Os05g33130
    endochitinase
    pathogenesis related (PR)-3 chitinase 2
    NP_001407416.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001420487.1 → NP_001407416.1  chitinase 2 precursor

      Status: VALIDATED

      Source sequence(s)
      AK108949, CI184851, CI774838
      UniProtKB/Swiss-Prot
      Q0DID3, Q43294, Q7DNA1
      UniProtKB/TrEMBL
      Q42970

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      19528355..19529814
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7DNA1.1 GenPept UniProtKB/Swiss-Prot:Q7DNA1

    Gene LinkOut

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    Research Materials