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    LOC4325146 uncharacterized LOC4325146 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325146, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4325146
    Gene description
    uncharacterized LOC4325146
    Locus tag
    OSNPB_010757400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    katanin; OJ1414_E05.21
    Expression
    Biased expression in roots before flowering (RPKM 12.4), flower buds (RPKM 9.4) and 3 other tissues See more
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    Genomic context

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    See LOC4325146 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (32407387..32411385)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (31806967..31811194)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351785 Neighboring gene gibberellin 2-beta-dioxygenase 3-like Neighboring gene uncharacterized LOC4325302 Neighboring gene interactor of constitutive active ROPs 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Functional isolation of novel nuclear proteins showing a variety of subnuclear localizations. Moriguchi K, et al. Plant Cell, 2005 Feb. PMID 15659629, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4325146
    Names
    Os01g0757400
    katanin p60 ATPase-containing subunit A-like 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      32407387..32411385
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015793869.3 → XP_015649355.1  uncharacterized protein LOC4325146

      UniProtKB/TrEMBL
      B9EZQ8, Q5JM00, Q7XXR9
      Conserved Domains (3) summary
      CHL00095
      Location:36 → 156
      clpC; Clp protease ATP binding subunit
      pfam17862
      Location:291 → 332
      AAA_lid_3; AAA+ lid domain
      cd19509
      Location:104 → 267
      RecA-like_VPS4-like; ATPase domain of VPS4, ATAD1, K, KTNA1, Spastin, FIGL-1 and similar ATPase domains
    Nucleotide Protein
    Heading Accession and Version

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