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    LOC4347697 DNA-(apurinic or apyrimidinic site) endonuclease 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347697, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4347697
    Gene description
    DNA-(apurinic or apyrimidinic site) endonuclease 2
    Locus tag
    OSNPB_090536000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 4.7), flower buds (RPKM 4.3) and 6 other tissues See more
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    Genomic context

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    See LOC4347697 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (25506019..25510766, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (21063900..21068759, complement)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107278482 Neighboring gene uncharacterized LOC4347696 Neighboring gene uncharacterized LOC136351725 Neighboring gene uncharacterized LOC4347698

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-(apurinic or apyrimidinic site) endonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables double-stranded DNA 3'-5' DNA exonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables endonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphoric diester hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in base-excision repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA-(apurinic or apyrimidinic site) endonuclease 2
    Names
    AP endonuclease 2-like
    DNA-(apurinic or apyrimidinic site) lyase 2
    Os09g0536000
    P0569E11.11

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      25506019..25510766 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015756538.3 → XP_015612024.1  DNA-(apurinic or apyrimidinic site) endonuclease 2

      UniProtKB/TrEMBL
      B8BDW2, Q0J018, Q69JZ1
      Conserved Domains (2) summary
      pfam06839
      Location:563 → 610
      zf-GRF; GRF zinc finger
      cl00490
      Location:3 → 335
      EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

    2. XM_015756539.3 → XP_015612025.1  DNA-(apurinic or apyrimidinic site) endonuclease 2

      UniProtKB/TrEMBL
      B8BDW2, Q0J018, Q69JZ1
      Conserved Domains (2) summary
      pfam06839
      Location:563 → 610
      zf-GRF; GRF zinc finger
      cl00490
      Location:3 → 335
      EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
    Nucleotide Protein
    Heading Accession and Version

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