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    LOC4351463 DNA-directed RNA polymerase V subunit 5A [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351463, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4351463
    Gene description
    DNA-directed RNA polymerase V subunit 5A
    Locus tag
    OSNPB_120139500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 19.1), flowers (RPKM 14.9) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 12
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (1943671..1946459, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (1917873..1920664, complement)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450 90A4-like Neighboring gene two-component response regulator ORR10-like Neighboring gene L-galactono-1,4-lactone dehydrogenase 2, mitochondrial-like Neighboring gene uncharacterized LOC107277556

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase I activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase III activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA-directed RNA polymerase V subunit 5A
    Names
    Os12g0139500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      1943671..1946459 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764143.3 → XP_015619629.1  DNA-directed RNA polymerase V subunit 5A

      UniProtKB/TrEMBL
      Q2QXY2
      Conserved Domains (1) summary
      PLN03111
      Location:131 → 335
      PLN03111; DNA-directed RNA polymerase II subunit family protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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