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    LOC4329252 protein SMALL AUXIN UP-REGULATED RNA 16 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329252, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4329252
    Gene description
    protein SMALL AUXIN UP-REGULATED RNA 16
    Locus tag
    OSNPB_020445100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1116_C12.13
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    Genomic context

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    See LOC4329252 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (14790397..14791241)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (14333097..14334014)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene transfer RNA serine (anticodon UGA) Neighboring gene transfer RNA serine (anticodon GCU) Neighboring gene non-specific lipid-transfer protein 4 Neighboring gene uncharacterized LOC136355226

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in response to auxin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein SMALL AUXIN UP-REGULATED RNA 16
    Names
    Os02g0445100
    putative auxin-induced protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      14790397..14791241
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015768671.2 → XP_015624157.1  protein SMALL AUXIN UP-REGULATED RNA 16

      UniProtKB/TrEMBL
      A0A0P0VIK7, A2X4C2, Q0E1H6, Q6EUB0
      Conserved Domains (1) summary
      cl23790
      Location:2 → 94
      Auxin_inducible; Auxin responsive protein
    Nucleotide Protein
    Heading Accession and Version

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