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    LOC4328623 chlorophyll a-b binding protein 8, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328623, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4328623
    Gene description
    chlorophyll a-b binding protein 8, chloroplastic
    Locus tag
    OSNPB_020197600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1524_D08.28-2; OJ1524_D08.28-3
    Expression
    Broad expression in leaves before flowering (RPKM 1158.9), roots after flowering (RPKM 820.8) and 4 other tissues See more
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    Genomic context

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    See LOC4328623 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (5479234..5481568, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (5468647..5470491, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4328621 Neighboring gene ultraviolet-B receptor UVR8 Neighboring gene uncharacterized LOC4328624 Neighboring gene B3 domain-containing protein LOC_Os02g10420 Neighboring gene uncharacterized LOC4328625

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in photosynthesis, light harvesting in photosystem I IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to light stimulus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast thylakoid membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plastoglobule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chlorophyll a-b binding protein 8, chloroplastic
    Names
    Os02g0197600
    P0026H03.3-2
    P0026H03.3-3
    chlorophyll a/b-binding protein type III precursor-like protein
    putative chlorophyll a/b-binding protein type III

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      5479234..5481568 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015769946.2 → XP_015625432.1  chlorophyll a-b binding protein 8, chloroplastic

      UniProtKB/TrEMBL
      A2X218, A3A460, Q6H748
      Conserved Domains (1) summary
      PLN00048
      Location:7 → 269
      PLN00048; photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
    Nucleotide Protein
    Heading Accession and Version

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