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    LOC4334840 ribosome-binding factor PSRP1, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334840, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4334840
    Gene description
    ribosome-binding factor PSRP1, chloroplastic
    Locus tag
    OSNPB_030856500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 283.3), leaves after flowering (RPKM 221.8) and 4 other tissues See more
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    Genomic context

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    See LOC4334840 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (37110493..37113517)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (36132043..36134533)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene ATP-dependent DNA helicase 2 subunit KU80-like Neighboring gene acyl carrier protein 3, chloroplastic Neighboring gene sucrose nonfermenting 4-like protein Neighboring gene gibberellin 20 oxidase 1-like Neighboring gene uncharacterized LOC112938228

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ribosomal small subunit binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of translational elongation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in primary metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ribosome-binding factor PSRP1, chloroplastic
    Names
    Os03g0856500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      37110493..37113517
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015775495.2 → XP_015630981.1  ribosome-binding factor PSRP1, chloroplastic

      UniProtKB/TrEMBL
      A0A0N7KIF2, B8ANR9, B9F7Z7, Q84M68
      Conserved Domains (2) summary
      pfam02482
      Location:83 → 180
      Ribosomal_S30AE; Sigma 54 modulation protein / S30EA ribosomal protein
      pfam16321
      Location:231 → 283
      Ribosom_S30AE_C; Sigma 54 modulation/S30EA ribosomal protein C-terminus
    Nucleotide Protein
    Heading Accession and Version

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