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    LOC4346993 probable cinnamyl alcohol dehydrogenase 8D [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346993, updated on 16-Jul-2024

    Summary

    Gene symbol
    LOC4346993
    Gene description
    probable cinnamyl alcohol dehydrogenase 8D
    Locus tag
    OSNPB_090400400
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CAD8D; OsCAD8D; OsJ_29284
    Expression
    Restricted expression toward roots before flowering (RPKM 14.8) See more
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    Genomic context

    See LOC4346993 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (18370601..18372589)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (14001114..14003141)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene probable cinnamyl alcohol dehydrogenase 8B Neighboring gene probable cinnamyl alcohol dehydrogenase 8C Neighboring gene probable inactive receptor kinase RLK902 Neighboring gene uncharacterized LOC107278912

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    probable cinnamyl alcohol dehydrogenase 8D
    Names
    LOC_Os09g23560
    P0435D08.35
    P0650H04.17
    putative cinnamyl alcohol dehydrogenase
    NP_001406094.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419165.1NP_001406094.1  probable cinnamyl alcohol dehydrogenase 8D

      Status: VALIDATED

      Source sequence(s)
      CB649137, CB655413, CB655414, CI402760, CI759303
      UniProtKB/Swiss-Prot
      A0A0P0XN99, Q6ERW5
      UniProtKB/TrEMBL
      A2Z122, A3BYL8

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      18370601..18372589
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)