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    LOC4328648 uncharacterized LOC4328648 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328648, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4328648
    Gene description
    uncharacterized LOC4328648
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 64.1), roots after flowering (RPKM 44.1) and 6 other tissues See more
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    Genomic context

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    See LOC4328648 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (5651467..5655278, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (5640798..5644623, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene EIN3-binding F-box protein 1 Neighboring gene 23.6 kDa heat shock protein, mitochondrial Neighboring gene uncharacterized LOC4328649 Neighboring gene uncharacterized LOC136355436 Neighboring gene calcium-dependent mitochondrial ATP-magnesium/phosphate carrier protein 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized LOC4328648
    Names
    Os02g0201000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001425730.1 → NP_001412659.1  uncharacterized LOC4328648

      Status: VALIDATED

      Source sequence(s)
      AU091706, AU173109, CI688001

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      5651467..5655278 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772049.2 → XP_015627535.1  uncharacterized LOC4328648 isoform X3

      UniProtKB/TrEMBL
      A0A8I3B0Q0, A3A492, Q0E301
      Conserved Domains (1) summary
      pfam13259
      Location:1 → 109
      DUF4050; Protein of unknown function (DUF4050)

    2. XM_066306996.1 → XP_066163093.1  uncharacterized LOC4328648 isoform X3

      UniProtKB/TrEMBL
      A0A8I3B0Q0, A3A492, Q0E301

    3. XM_026023344.2 → XP_025879129.1  uncharacterized LOC4328648 isoform X1

      Conserved Domains (1) summary
      pfam13259
      Location:87 → 199
      DUF4050; Protein of unknown function (DUF4050)

    4. XM_026023345.2 → XP_025879130.1  uncharacterized LOC4328648 isoform X2

      Conserved Domains (1) summary
      pfam13259
      Location:84 → 196
      DUF4050; Protein of unknown function (DUF4050)
    Nucleotide Protein
    Heading Accession and Version

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