LOC4325003 gibberellin 20 oxidase 2-like [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4325003
Gene description: gibberellin 20 oxidase 2-like
Locus tag: OSNPB_010883800
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: sd1; GA20; Sd-1; 20ox2; C20ox2; SD1-2E; GA20OX2; Os20ox2; osGA20ox2
Expression: Broad expression in roots before flowering (RPKM 5.8), leaves before flowering (RPKM 3.1) and 5 other tissues See more
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Genomic context

Location:: chromosome: 1

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	1	NC_089035.1 (39012696..39015818)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	1	NC_029256.1 (38382358..38385504)

Chromosome 1 - NC_089035.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Year-round flowering gene e1, a mutation at the E1 locus on rice chromosome 7 and its combination with green revolution gene sd1 in an isogenic cell line.
Title: Year-round flowering gene e1, a mutation at the E1 locus on rice chromosome 7 and its combination with green revolution gene sd1 in an isogenic cell line.
a G to T single nucleotide polymorphism at position 38,382,746 in the sd1 locus on chromosome 1 of Koshihikari, causing a loss-of-function mutation of GA20-oxidase.
Title: Genetic Performance of the Semidwarfing Allele sd1 Derived from a Japonica Rice Cultivar and Minimum Requirements to Detect Its Single-Nucleotide Polymorphism by MiSeq Whole-Genome Sequencing.
Mutation of the SD1 gene is considered to be a key factor in controlling the protein content in rice grains.
Title: Control of grain protein contents through SEMIDWARF1 mutant alleles: sd1 increases the grain protein content in Dee-geo-woo-gen but not in Reimei.

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables gibberellin 20-oxidase activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in flower development	IEA Inferred from Electronic Annotation more info	PubMed
involved_in gibberellin biosynthetic process	IEA Inferred from Electronic Annotation more info	PubMed
involved_in response to light stimulus	IEA Inferred from Electronic Annotation more info	PubMed
involved_in unidimensional cell growth	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: gibberellin 20 oxidase 2

Names: B1065E10.46; GA 20-oxidase 2; GA C20oxidase2; Gibberellin C-20 oxidase 2; LOC_Os01g66100; Protein semidwarf-1; SD1-2-protein; gibberellin-20 oxidase; putative gibberellin 20-oxidase

NP_001415098.1

EC 1.14.11.-

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.