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    LOC4324379 26S proteasome non-ATPase regulatory subunit 14 homolog [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324379, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4324379
    Gene description
    26S proteasome non-ATPase regulatory subunit 14 homolog
    Locus tag
    OSNPB_010267200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsRPN11
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 87.0), roots after flowering (RPKM 81.5) and 6 other tissues See more
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    Genomic context

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    See LOC4324379 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (9179268..9182782)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (9166346..9169857)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene vacuolar lysine transporter YPQ1 Neighboring gene N6-adenosine-methyltransferase non-catalytic subunit MTB Neighboring gene putative serpin-Z12 Neighboring gene cell number regulator 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metallopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables proteasome binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of proteasome regulatory particle, lid subcomplex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    26S proteasome non-ATPase regulatory subunit 14 homolog
    Names
    26S proteasome regulatory particle non-ATPase subunit11
    Os01g0267200
    P0011D01.14
    putative Pad1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001428105.1 → NP_001415034.1  26S proteasome non-ATPase regulatory subunit 14 homolog

      Status: VALIDATED

      Source sequence(s)
      AK099455, CI401212, D22941, KY170872
      UniProtKB/TrEMBL
      A0A0N7KCQ5, A0A8J8YS49, A2WN87, A2Y3X5, Q0JNT1, Q9SDD1

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      9179268..9182782
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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