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    LOC4328016 40S ribosomal protein S4-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328016, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4328016
    Gene description
    40S ribosomal protein S4-like
    Locus tag
    OSNPB_020105900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    RPS4; SS620; OJ1359_D06.12
    Expression
    Ubiquitous expression in flower buds (RPKM 376.2), flowers (RPKM 244.7) and 6 other tissues See more
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    Genomic context

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    See LOC4328016 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (323076..325643, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (316699..319148, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene BAG family molecular chaperone regulator 7 Neighboring gene uncharacterized LOC4328015 Neighboring gene uncharacterized LOC136355075 Neighboring gene sucrose:sucrose 1-fructosyltransferase Neighboring gene putative pentatricopeptide repeat-containing protein At1g68930

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    small ribosomal subunit protein eS4
    Names
    40S ribosomal protein S4
    LOC_Os02g01560
    SCAR protein SS620
    putative ribosomal protein S4
    ribosomal protein small subunit 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001406417.1 → NP_001393346.1  small ribosomal subunit protein eS4

      Status: VALIDATED

      Source sequence(s)
      CB000020, CI019704, CI303240
      UniProtKB/Swiss-Prot
      O24235, P49398, Q6ETD5
      UniProtKB/TrEMBL
      A2WZV1, A2Y3W4, A3A284, Q0E4Q0

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      323076..325643 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P49398.3 GenPept UniProtKB/Swiss-Prot:P49398

    Gene LinkOut

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    Research Materials